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Steven-RobertsSteven-Roberts
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Fix broken links
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11 files changed

+24
-21
lines changed

11 files changed

+24
-21
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‎toolbox/+otp/+ascherlineardae/AscherLinearDAEProblem.m

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% The start and final time.
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% y0 : numeric(2, 1)
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% The initial condition.
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% parameters : AscherLinearDAEParameters
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% parameters : otp.ascherlineardae.AscherLinearDAEParameters
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% The parameters.
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obj@otp.Problem('Ascher Linear DAE', 2, timeSpan, y0, parameters);
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end

‎toolbox/+otp/+brusselator/BrusselatorProblem.m

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% The start and final time.
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% y0 : numeric(2, 1)
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% The initial conditions.
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% parameters : BrusselatorParameters
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% parameters : otp.brusselator.BrusselatorParameters
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% The parameters.
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obj@otp.Problem('Brusselator', 2, timeSpan, y0, parameters);

‎toolbox/+otp/+cusp/CUSPProblem.m

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% The start and final time.
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% y0 : numeric(:, 1)
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% The initial conditions.
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% parameters : CUSPParameters
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% parameters : otp.cusp.CUSPParameters
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% The parameters.
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obj@otp.Problem('CUSP', [], timeSpan, y0, parameters);

‎toolbox/+otp/+linear/LinearProblem.m

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% The start and final time.
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% y0 : numeric(:, 1)
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% The initial conditions.
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% parameters : LinearParameters
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% parameters : otp.linear.LinearParameters
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% The parameters.
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obj@otp.Problem('Linear', [], timeSpan, y0, parameters);

‎toolbox/+otp/+lorenz63/Lorenz63Problem.m

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% The start and final time.
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% y0 : numeric(3, 1)
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% The initial conditions.
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% parameters : Lorenz63Parameters
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% parameters : otp.lorenz63.Lorenz63Parameters
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% The parameters.
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obj@otp.Problem('Lorenz Equations', 3, timeSpan, y0, parameters);

‎toolbox/+otp/+lorenz96/Lorenz96Problem.m

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% The start and final time.
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% y0 : numeric(:, 1)
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% The initial conditions.
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% parameters : Lorenz96Parameters
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% parameters : otp.lorenz96.Lorenz96Parameters
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% The parameters.
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obj@otp.Problem('Lorenz 96', [], timeSpan, y0, parameters);

‎toolbox/+otp/+oregonator/OregonatorProblem.m

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% The start and final time.
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% y0 : numeric(3, 1)
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% The initial conditions.
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% parameters : OregonatorParameters
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% parameters : otp.oregonator.OregonatorParameters
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% The parameters.
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obj@otp.Problem('Oregonator', 3, timeSpan, y0, parameters);

‎toolbox/+otp/+protherorobinson/ProtheroRobinsonProblem.m

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% The start and final time.
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% y0 : numeric(:, 2)
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% The initial conditions.
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% parameters : ProtheroRobinsonParameters
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% parameters : otp.protherorobinson.ProtheroRobinsonParameters
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% The parameters.
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obj@otp.Problem('Prothero–Robinson', [], timeSpan, y0, parameters);

‎toolbox/+otp/+robertson/+presets/ROBER.m

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classdef ROBER < otp.robertson.RobertsonProblem
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% The Robertson configuration from :cite:p:`HW96` (p. 144). This differs from :class:`Canonical` only in the time
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% span which is extended to $[0, 10^{11}]$. This presents a challenge for numerical integrators to preserve solution
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% positivity.
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% The Robertson configuration from :cite:p:`HW96` (p. 144). This differs from
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% :class:`otp.robertson.presets.Canonical` only in the time span which is extended to $[0, 10^{11}]$. This presents
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% a challenge for numerical integrators to preserve solution positivity.
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methods
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function obj = ROBER

‎toolbox/+otp/+robertson/RobertsonProblem.m

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% The start and final time.
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% y0 : numeric(3, 1)
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% The initial conditions.
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% parameters : RobertsonParameters
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% parameters : otp.robertson.RobertsonParameters
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% The parameters.
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obj@otp.Problem('Robertson', 3, timeSpan, y0, parameters);

‎toolbox/+otp/RHS.m

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% t : numeric
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% The time at which $f$ is evaluated.
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% y : numeric(:, 1) or numeric(:, :)
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% The state at which $f$ is evaluated. If :attr:`Vectorized` is ``'on'``, it can be a matrix where each
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% column is a state.
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% The state at which $f$ is evaluated. If :attr:`otp.RHS.Vectorized` is ``'on'``, it can be a matrix where
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% each column is a state.
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%
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% Returns
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% -------
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% $\sum_{j,k} \frac{\partial^2 f_i(t, y; p)}{\partial y_j \partial y_k} u_j v_k$.
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HessianVectorProduct
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% The action of a vector on the partial derivative of :attr:`JacobianAdjointVectorProduct` with respect to $y$.
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% The action of a vector on the partial derivative of :attr:`otp.RHS.JacobianAdjointVectorProduct` with respect
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% to $y$.
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%
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% If set, it is a function handle with the following signature:
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%
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end
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properties (Dependent)
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% A dependent property which returns :attr:`Jacobian` if it is a matrix and ``[]`` if it is a function handle.
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% A dependent property which returns :attr:`otp.RHS.Jacobian` if it is a matrix and ``[]`` if it is a function
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% handle.
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JacobianMatrix
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% A dependent property which wraps :attr:`Jacobian` in a function handle if necessary.
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% A dependent property which wraps :attr:`otp.RHS.Jacobian` in a function handle if necessary.
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JacobianFunction
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% A dependent property which returns :attr:`Mass` if it is a matrix and ``[]`` if it is a function handle.
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% A dependent property which returns :attr:`otp.RHS.Mass` if it is a matrix and ``[]`` if it is a function
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% handle.
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MassMatrix
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% A dependent property which wraps :attr:`Mass` in a function handle if necessary.
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% A dependent property which wraps :attr:`otp.RHS.Mass` in a function handle if necessary.
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MassFunction
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end
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%
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% Warning
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% -------
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% In Octave, the value for :attr:`Vectorized` is ignored because it is not used by built in solvers and
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% causes an error for ``ode15s``.
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% In Octave, the value for :attr:`otp.RHS.Vectorized` is ignored because it is not used by built in solvers
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% and causes an error for ``ode15s``.
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obj.F = F;
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if mod(nargin, 2) == 0

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