Examples using Clustergrammer2 to explore high-dimensional datasets.
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Aug 24, 2020 - Jupyter Notebook
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scrna-seq
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Tutorials of Dynamo usage cases and code to reproduce the manuscript
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Apr 6, 2022 - Jupyter Notebook
Final year project experimenting with clustering and topological data analysis of scRNA-seq data using Python and R across two Jupyter notebooks
python machine-learning bioinformatics clustering mapper jupyter-notebook computational-biology pca autoencoder scrna-seq k-means principal-component-analysis topological-data-analysis hierarchical-clustering tda single-cell-rna-seq splatter kepler-mapper
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Aug 8, 2021 - Jupyter Notebook
Functions that implement the algorithms described in the preprint "Normalization and gene selection for single-cell RNA-seq UMI data using sampling-adjusted sums of squares of Pearson residuals with a Poisson model" and Jupyter notebooks that reproduce the results in the preprint and its Supplement 1
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Dec 21, 2023 - Jupyter Notebook
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