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@CNAG-Biomedical-Informatics

CNAG Biomedical Informatics

README.md

Welcome to CNAG Biomedical Informatics!

We are a subdivision of the Biomedical Genomics Group at CNAG. Our research focuses on the development of tools for handling genomic and phenotypic data.

Mainly using Perl, Python, JavaScript (React) and R.

Tools

Convert-Pheno Convert-Pheno

A software toolkit for the interconversion of standard data models for phenotypic data

Published open access: Access the article by clicking here.
Playground Uptime Robot status
Documentation Perl Module Documentation Status
Documentation Web-UI Documentation Status
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

Pheno-Ranker

A toolkit for comparison of phenotypic data stored in GA4GH standards and beyond

Published open access: Access the article by clicking here
Playground Uptime Robot status
Documentation Perl Module Documentation Status
Documentation Web-UI Documentation Status
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

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  1. convert-pheno convert-pheno Public

    A software toolkit for the interconversion of standard data models for phenotypic data

    Perl 14 1

  2. convert-pheno-ui convert-pheno-ui Public

    The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

    FreeMarker 4 1

  3. pheno-ranker pheno-ranker Public

    Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2, as well as CSV.

    Perl 7 1

  4. pheno-ranker-ui pheno-ranker-ui Public

    The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

    R 2

  5. beacon2-cbi-tools beacon2-cbi-tools Public

    Forked from EGA-archive/beacon2-ri-tools

    Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)

    Perl 2

Repositories

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