Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
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Apr 25, 2025 - C
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next-generation-sequencing
Here are 12 public repositories matching this topic...
Finds SNP sites from a multi-FASTA alignment file
bioinformatics research genomics pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health infectious-diseases
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Dec 16, 2020 - C
An efficient FASTQ manipulation suite
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Jan 27, 2020 - C
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
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Oct 2, 2024 - C
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
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Aug 3, 2023 - C
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
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Nov 21, 2024 - C
Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data
bioinformatics next-generation-sequencing variant-calling whole-genome-sequencing mitochondria variant-callers bioinformatics-tool mitochondrial-variants
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Jun 6, 2025 - C
Convert bam to two wig files with strand-specific coverage
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Mar 27, 2018 - C
A header-only C library for hashing DNA sequences
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Apr 24, 2025 - C
High performance computing and data processing
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Apr 5, 2024 - C
Code and report for a small tool to optimize 16S sequencing pipelines
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Jun 13, 2014 - C
A sequence-read simulator program for NGS
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Apr 29, 2024 - C
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